STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU52588.1Alkaline phosphatase D. (558 aa)    
Predicted Functional Partners:
SDU08768.1
Glycerophosphoryl diester phosphodiesterase.
 
 
  0.670
SDU41204.1
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.638
folE
GTP cyclohydrolase I.
    
 0.509
folE-2
GTP cyclohydrolase I.
    
 0.509
SDU52599.1
Protein of unknown function.
       0.486
SDU88303.1
Glycerophosphoryl diester phosphodiesterase.
  
 
  0.451
Your Current Organism:
Jiangella alkaliphila
NCBI taxonomy Id: 419479
Other names: DSM 45079, J. alkaliphila, JBRI 2008, JCM 15620, Jiangella alkaliphila Lee 2008, KCTC 19222, strain D8-87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.