STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX90176.1Ribosomal protein S12 methylthiotransferase accessory factor. (574 aa)    
Predicted Functional Partners:
SCX97387.1
S-adenosylmethionine-dependent methyltransferase.
  
     0.639
SCX95628.1
Hypothetical protein.
  
  
 0.592
SCY82476.1
Hypothetical protein.
  
  
 0.592
SCY47825.1
ABC-2 type transport system permease protein.
  
  
 0.539
SCY90259.1
ABC-type multidrug transport system, permease component.
  
  
 0.539
SCY81790.1
SagB-type dehydrogenase domain-containing protein.
  
  
 0.537
SCX90389.1
Nitroreductase.
  
  
 0.523
SCY18857.1
Nitroreductase.
  
  
 0.523
SCY34774.1
Nitroreductase.
  
  
 0.523
SCY33197.1
Nitroreductase.
  
  
 0.523
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.