STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY03600.1Small redox-active disulfide protein 2. (166 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.992
SCX75494.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
 0.968
SCY90083.1
2,4-dienoyl-CoA reductase (NADPH2).
  
 0.943
SCY08030.1
Cytochrome c-type biogenesis protein.
 
 
 0.912
SCX90142.1
Dihydrolipoamide dehydrogenase.
  
 0.909
SCY03583.1
Hypothetical protein.
 
  
 0.906
SCY58678.1
Dihydrolipoamide dehydrogenase.
  
 0.904
SCY58003.1
Protein SCO1/2.
  
 
 0.865
SCX96904.1
Amino acid adenylation domain-containing protein.
  
 
 0.834
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.829
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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