STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40ePFAM: Ribosomal protein L40e; KEGG: mja:MJ0707 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (47 aa)    
Predicted Functional Partners:
rpl21e
PFAM: Ribosomal protein L21e; KEGG: mmp:MMP0093 ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 0.999
rps28e
PFAM: Ribosomal protein S28e; KEGG: mmp:MMP0640 SSU ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family.
 
 0.999
rps6e
PFAM: Ribosomal protein S6e; KEGG: mmp:MMP1207 ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.999
rps24e
PFAM: Ribosomal protein S24e; KEGG: mmp:MMP0443 SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
 
 0.999
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: mmp:MMP1579 probable SSU ribosomal protein S15P/S13E.
   
 0.999
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
  
 0.999
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mmp:MMP0669 SSU ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 0.999
rps19
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.999
rps17e
KEGG: mmp:MMP0577 30S ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
   
 0.999
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.999
Your Current Organism:
Methanococcus aeolicus
NCBI taxonomy Id: 419665
Other names: M. aeolicus Nankai-3, Methanococcus aeolicus Nankai-3, Methanococcus aeolicus str. Nankai-3, Methanococcus aeolicus strain Nankai-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.