STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maeo_1183PFAM: regulatory protein LysR; KEGG: mmp:MMP0018 transcriptional regulator, LysR family member. (293 aa)    
Predicted Functional Partners:
Maeo_0990
PFAM: PhoU family protein; KEGG: mmp:MMP1199 phosphate transport system regulatory protein-related.
 
  
 0.803
Maeo_1169
TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: mmp:MMP0002 L-seryl-tRNA selenium transferase related protein.
 
   
 0.764
Maeo_1143
PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: mmp:MMP0028 adenosyl-cobyric acid synthase.
 
    0.740
Maeo_1147
PFAM: regulatory protein MarR; regulatory protein ArsR; KEGG: mmp:MMP0033 LysR family member.
 
  
 0.725
Maeo_1414
PFAM: Mur ligase middle domain protein; KEGG: mja:MJ0258 hypothetical protein.
  
  
 0.724
Maeo_0771
PFAM: protein of unknown function DUF129; KEGG: mmp:MMP1664 hypothetical protein.
  
    0.720
Maeo_1409
PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: mmp:MMP1424 oligosaccharyl transferase, STT3 subunit.
 
     0.720
Maeo_0442
PFAM: beta-lactamase domain protein; KEGG: mja:MJ0296 hypothetical protein.
 
  
 0.707
Maeo_0375
PFAM: CBS domain containing protein; KEGG: mmp:MMP1466 hypothetical protein.
  
     0.652
Maeo_0053
Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)-like protein; KEGG: mmp:MMP0089 precorrin-2 oxidase / ferrochelatase.
 
   
 0.640
Your Current Organism:
Methanococcus aeolicus
NCBI taxonomy Id: 419665
Other names: M. aeolicus Nankai-3, Methanococcus aeolicus Nankai-3, Methanococcus aeolicus str. Nankai-3, Methanococcus aeolicus strain Nankai-3
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