STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl15ePFAM: Ribosomal protein L15e; KEGG: mmp:MMP0298 LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family. (194 aa)    
Predicted Functional Partners:
rpl21e
PFAM: Ribosomal protein L21e; KEGG: mmp:MMP0093 ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
 
 0.999
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
   
 0.999
rpl31e
PFAM: Ribosomal protein L31e; KEGG: mmp:MMP0062 ribosomal protein L31e; Belongs to the eukaryotic ribosomal protein eL31 family.
  
 0.999
rpl37ae
TIGRFAM: ribosomal protein L37a; PFAM: Ribosomal L37ae protein; KEGG: mmp:MMP0249 large subunit ribosomal protein L37Ae.
 
 
 0.999
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: mmp:MMP1579 probable SSU ribosomal protein S15P/S13E.
 
 
 0.999
rpl30e
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: mmp:MMP1365 ribosomal protein L30E; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 0.999
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 0.999
rpl18e
PFAM: ribosomal protein L15; KEGG: mja:MJ0193 50S ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.999
rpl22
Ribosomal protein L22; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
 
 0.999
rpl29
PFAM: ribosomal protein L29; KEGG: mmq:MmarC5_0173 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 0.999
Your Current Organism:
Methanococcus aeolicus
NCBI taxonomy Id: 419665
Other names: M. aeolicus Nankai-3, Methanococcus aeolicus Nankai-3, Methanococcus aeolicus str. Nankai-3, Methanococcus aeolicus strain Nankai-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.