Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Msm_0090 | cpgS | Msm_0090 | Msm_0091 | Conserved hypothetical protein Msm_0090. | 2,3-diphosphoglycerate synthase (putative GTPase); Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP. | 0.543 |
Msm_0092 | cpgS | Msm_0092 | Msm_0091 | Putative adhesin-like protein. | 2,3-diphosphoglycerate synthase (putative GTPase); Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP. | 0.545 |
cpgS | Msm_0090 | Msm_0091 | Msm_0090 | 2,3-diphosphoglycerate synthase (putative GTPase); Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP. | Conserved hypothetical protein Msm_0090. | 0.543 |
cpgS | Msm_0092 | Msm_0091 | Msm_0092 | 2,3-diphosphoglycerate synthase (putative GTPase); Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP. | Putative adhesin-like protein. | 0.545 |
cpgS | pgk2 | Msm_0091 | Msm_0791 | 2,3-diphosphoglycerate synthase (putative GTPase); Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP. | 2-phosphoglycerate kinase; COG2074. | 0.481 |
pgk2 | cpgS | Msm_0791 | Msm_0091 | 2-phosphoglycerate kinase; COG2074. | 2,3-diphosphoglycerate synthase (putative GTPase); Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP. | 0.481 |