Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Msm_0359 | Msm_0360 | Msm_0359 | Msm_0360 | Cell wall biosynthesis protein, MurD-like peptide ligase family; COG0769. | Cell wall biosynthesis protein, phospho-N-acetylmuramoyl-pentapeptide-transferase family; COG0472. | 0.979 |
| Msm_0359 | Msm_0361 | Msm_0359 | Msm_0361 | Cell wall biosynthesis protein, MurD-like peptide ligase family; COG0769. | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | 0.849 |
| Msm_0359 | Msm_0362 | Msm_0359 | Msm_0362 | Cell wall biosynthesis protein, MurD-like peptide ligase family; COG0769. | Coenzyme F420-reducing hydrogenase (Ni,Fe-hydrogenase maturation protease), delta subunit; COG0680. | 0.556 |
| Msm_0360 | Msm_0359 | Msm_0360 | Msm_0359 | Cell wall biosynthesis protein, phospho-N-acetylmuramoyl-pentapeptide-transferase family; COG0472. | Cell wall biosynthesis protein, MurD-like peptide ligase family; COG0769. | 0.979 |
| Msm_0360 | Msm_0361 | Msm_0360 | Msm_0361 | Cell wall biosynthesis protein, phospho-N-acetylmuramoyl-pentapeptide-transferase family; COG0472. | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | 0.859 |
| Msm_0360 | Msm_0362 | Msm_0360 | Msm_0362 | Cell wall biosynthesis protein, phospho-N-acetylmuramoyl-pentapeptide-transferase family; COG0472. | Coenzyme F420-reducing hydrogenase (Ni,Fe-hydrogenase maturation protease), delta subunit; COG0680. | 0.726 |
| Msm_0361 | Msm_0359 | Msm_0361 | Msm_0359 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Cell wall biosynthesis protein, MurD-like peptide ligase family; COG0769. | 0.849 |
| Msm_0361 | Msm_0360 | Msm_0361 | Msm_0360 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Cell wall biosynthesis protein, phospho-N-acetylmuramoyl-pentapeptide-transferase family; COG0472. | 0.859 |
| Msm_0361 | Msm_0362 | Msm_0361 | Msm_0362 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Coenzyme F420-reducing hydrogenase (Ni,Fe-hydrogenase maturation protease), delta subunit; COG0680. | 0.890 |
| Msm_0361 | Msm_1043 | Msm_0361 | Msm_1043 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Dihydroorotate dehydrogenase electron transfer subunit, PyrK; COG0543. | 0.872 |
| Msm_0361 | Msm_1617 | Msm_0361 | Msm_1617 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Orotidine-5'-phosphate decarboxylase, PyrF; COG0284; Belongs to the OMP decarboxylase family. | 0.842 |
| Msm_0361 | carA | Msm_0361 | Msm_0489 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Carbamoylphosphate synthase, small subunit, CarA; COG0505; Belongs to the CarA family. | 0.973 |
| Msm_0361 | pyrB | Msm_0361 | Msm_1263 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Aspartate carbamoyltransferase, PyrB; COG0540. | 0.860 |
| Msm_0361 | pyrC | Msm_0361 | Msm_0997 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Dihydroorotase, PyrC; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.885 |
| Msm_0361 | pyrD | Msm_0361 | Msm_1044 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Dihydroorotate dehydrogenase, PyrD; Catalyzes the conversion of dihydroorotate to orotate. | 0.874 |
| Msm_0361 | pyrE | Msm_0361 | Msm_0821 | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | Orotate phosphoribosyltransferase, PyrE; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.855 |
| Msm_0362 | Msm_0359 | Msm_0362 | Msm_0359 | Coenzyme F420-reducing hydrogenase (Ni,Fe-hydrogenase maturation protease), delta subunit; COG0680. | Cell wall biosynthesis protein, MurD-like peptide ligase family; COG0769. | 0.556 |
| Msm_0362 | Msm_0360 | Msm_0362 | Msm_0360 | Coenzyme F420-reducing hydrogenase (Ni,Fe-hydrogenase maturation protease), delta subunit; COG0680. | Cell wall biosynthesis protein, phospho-N-acetylmuramoyl-pentapeptide-transferase family; COG0472. | 0.726 |
| Msm_0362 | Msm_0361 | Msm_0362 | Msm_0361 | Coenzyme F420-reducing hydrogenase (Ni,Fe-hydrogenase maturation protease), delta subunit; COG0680. | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | 0.890 |
| Msm_1043 | Msm_0361 | Msm_1043 | Msm_0361 | Dihydroorotate dehydrogenase electron transfer subunit, PyrK; COG0543. | Carbamoyl-phosphate synthase, large subunit, CarB; Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynt [...] | 0.872 |
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