STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000962Endoribonuclease ysh-1. (859 aa)    
Predicted Functional Partners:
BK809_0001556
Cleavage and polyadenylation specificity factor CPSF30.
   
 0.999
BK809_0000866
Cleavage and polyadenylation specificity factor subunit 2.
   
0.998
BK809_0001017
Polyadenylation factor subunit 2.
   
 0.997
BK809_0007726
mRNA cleavage and polyadenylation specificity factor complex subunit pta1.
   
 0.997
BK809_0002496
Putative RING finger protein.
    
 0.996
BK809_0004546
WD repeat-containing protein 82.
   
 0.993
BK809_0007569
Protein CFT1.
   
 0.992
BK809_0006645
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.990
BK809_0003474
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.990
BK809_0007459
mRNA 3'-end-processing protein YTH1.
   
 0.988
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.