STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004197E3 ubiquitin-protein ligase TOM1-like. (3751 aa)    
Predicted Functional Partners:
BK809_0003742
Putative ubiquitin fusion degradation protein C12B10.01c.
   
 
0.980
BK809_0002129
Putative an1-type zinc finger protein.
    
 0.843
BK809_0006529
Ubiquitin-60S ribosomal protein L40.
    
 0.843
BK809_0002069
Ubiquitin-60S ribosomal protein L40.
    
 0.786
BK809_0006409
Putative elongation factor 3.
   
   0.779
BK809_0002555
Putative ubiquitin-40s ribosomal protein s31 fusion protein.
   
 0.777
BK809_0002836
Putative basic-leucine zipper transcription factor.
   
 0.777
BK809_0003125
CIA30 domain-containing protein.
   
 0.777
BK809_0002046
Ubiquitin-activating enzyme E1 1; Belongs to the ubiquitin-activating E1 family.
   
 0.760
BK809_0002511
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.716
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.