STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_000349054S ribosomal protein L27, mitochondrial. (103 aa)    
Predicted Functional Partners:
BK809_0004737
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.995
BK809_0002886
54S ribosomal protein L41, mitochondrial.
   
 
 0.994
BK809_0003528
37S ribosomal protein S12, mitochondrial.
   
 
 0.993
BK809_0000138
54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.991
BK809_0000806
Putative mitochondrial 54s ribosomal protein 19; Belongs to the universal ribosomal protein uL11 family.
   
 0.990
BK809_0004676
54S ribosomal protein L9, mitochondrial.
   
  0.989
BK809_0001371
Ribosomal protein S16, mitochondrial.
   
   0.988
BK809_0004191
Putative mitochondrial 54s ribosomal protein 47; Belongs to the universal ribosomal protein uL16 family.
   
 0.987
BK809_0005097
54S ribosomal protein L51, mitochondrial.
   
 
 0.987
BK809_0003945
54S ribosomal protein subunit img1, mitochondrial.
   
 
 0.987
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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