STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (432 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.999
RNPS1
RNA binding protein with serine rich domain 1.
    
 0.994
SRRM1
Serine and arginine repetitive matrix 1.
    
 0.990
ENSSARP00000008153
annotation not available
   
 0.987
CASC3
CASC3 exon junction complex subunit.
    
 0.985
RBM8A
RNA binding motif protein 8A.
    
 0.985
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.980
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.974
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
  
  
0.961
ENSSARP00000012285
annotation not available
     
 0.960
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.