STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47633.1COG:COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]; Pfam:PF01546:Peptidase M20; Pfam:PF01546:Peptidase M20; SUPERFAMILY:SSF53187:No Description. (449 aa)    
Predicted Functional Partners:
egtC
TIGR03442: ergothioneine biosynthesis protein EgtC; Catalyzes the hydrolysis of the gamma-glutamyl amide bond of hercynyl-gamma-L-glutamyl-L-cysteine sulfoxide to produce hercynylcysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine.
 
 
    0.833
AHY47634.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY47635.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF53098:Ribonuclease H-like domain.
       0.732
AHY47636.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.582
AHY47637.1
COG:COG4405: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF04266:ASCH domain; Pfam:PF04266:ASCH domain; PIRSF:PIRSF021320:Protein of unknown function DUF984; SMART:SM01022:ASCH domain; SUPERFAMILY:SSF88697:PUA-like domain.
       0.582
AHY47632.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.535
AHY47638.1
COG:COG0420: DNA repair exonuclease [DNA replication recombination and repair]; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; SUPERFAMILY:SSF56300:No Description.
  
    0.439
AHY47639.1
RecF/RecN/SMC N terminal domain; COG:COG0419: ATPase involved in DNA repair [DNA replication recombination and repair]; Pfam:PF02463:RecF/RecN/SMC; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.438
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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