STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47802.1TIGRFAM:TIGR02123:TRAP transporter, 4TM/12TM fusion protein; COG:COG4666: TRAP-type uncharacterized transport system fused permease components [General function prediction only]; Pfam:PF06808:TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP_fused. (657 aa)    
Predicted Functional Partners:
AHY47801.1
TIGRFAM:TIGR02122:TRAP transporter solute receptor, TAXI family; COG:COG2358: TRAP-type uncharacterized transport system periplasmic component [General function prediction only]; Pfam:PF09084:NMT1/THI5-like; SUPERFAMILY:SSF53850:No Description; TRAP_TAXI.
    0.986
AHY46355.1
COG:COG3333: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF01970:Protein of unknown function DUF112, transmembrane; Pfam:PF01970:Protein of unknown function DUF112, transmembrane.
  
     0.716
AHY46353.1
COG:COG3181: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF03401:Bordetella uptake gene; Pfam:PF03401:Bordetella uptake gene; PIRSF:PIRSF017082:Bordetella uptake gene; SUPERFAMILY:SSF53850:No Description.
  
     0.705
AHY47803.1
COG:COG1126: ABC-type polar amino acid transport system ATPase component [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
     0.550
AHY45385.1
Pfam:PF07670:Nucleoside recognition Gate;Reactome: REACT_15518; Reactome: REACT_1698.
  
     0.446
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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