STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y3BWR3Putative RNA polymerase Rpb1, domain 5. (654 aa)    
Predicted Functional Partners:
RBP36A
Putative DNA-directed RNA polymerase family protein.
  
 0.869
A0A251V6S4
Putative DNA-directed RNA polymerase, alpha subunit.
  
 0.869
A0A251TNH9
Putative DNA binding,DNA-directed RNA polymerase.
   
 0.863
A0A251TYD3
Putative SIN-like family protein.
   
 0.853
A0A251SNX8
Putative RNA polymerase III, subunit Rpc25.
   
 0.840
NRPB6A
Putative RNA polymerase Rpb6.
  
 0.832
NRPB6B
Putative RNA polymerase Rpb6.
  
 0.832
NRPA1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
0.827
A0A251V8D0
Uncharacterized protein.
  
 0.827
A0A251TYE6
Putative DNA-directed RNA polymerase, RBP11-like dimerization domain-containing protein.
   
 0.826
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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