A0A251VCJ6 protein (Helianthus annuus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A251VCJ6

Uncharacterized protein. (168 aa)

Predicted Functional Partners:

UPF1

0.967

A0A251TV12

0.901

ATUPF3

0.901

A0A251V5Q0

0.901

A0A251SCZ3

0.889

A0A251SR88

0.889

Y14

0.889

A0A251VUE3

0.889

A0A251T6T9

0.810

PABN1

0.810

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251SCZ3	A0A251T6T9	A0A251SCZ3	A0A251T6T9	Uncharacterized protein.	Putative myb domain, plant, Homeodomain-like protein.	0.834
A0A251SCZ3	A0A251TV12	A0A251SCZ3	A0A251TV12	Uncharacterized protein.	Putative regulator of nonsense-mediated decay, UPF3.	0.908
A0A251SCZ3	A0A251V5Q0	A0A251SCZ3	A0A251V5Q0	Uncharacterized protein.	Putative regulator of nonsense-mediated decay, UPF3.	0.908
A0A251SCZ3	A0A251VCJ6	A0A251SCZ3	A0A251VCJ6	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A251SCZ3	ATUPF3	A0A251SCZ3	A0A251UL25	Uncharacterized protein.	Putative smg-4/UPF3 family protein.	0.908
A0A251SCZ3	PABN1	A0A251SCZ3	A0A251T7Q2	Uncharacterized protein.	Putative polyadenylate-binding protein 1.	0.834
A0A251SCZ3	UPF1	A0A251SCZ3	A0A251VBZ4	Uncharacterized protein.	Putative RNA helicase, putative.	0.956
A0A251SR88	A0A251T6T9	A0A251SR88	A0A251T6T9	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative myb domain, plant, Homeodomain-like protein.	0.834
A0A251SR88	A0A251TV12	A0A251SR88	A0A251TV12	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative regulator of nonsense-mediated decay, UPF3.	0.908
A0A251SR88	A0A251V5Q0	A0A251SR88	A0A251V5Q0	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative regulator of nonsense-mediated decay, UPF3.	0.908
A0A251SR88	A0A251VCJ6	A0A251SR88	A0A251VCJ6	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Uncharacterized protein.	0.889
A0A251SR88	A0A251VUE3	A0A251SR88	A0A251VUE3	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	0.900
A0A251SR88	ATUPF3	A0A251SR88	A0A251UL25	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative smg-4/UPF3 family protein.	0.908
A0A251SR88	PABN1	A0A251SR88	A0A251T7Q2	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative polyadenylate-binding protein 1.	0.834
A0A251SR88	UPF1	A0A251SR88	A0A251VBZ4	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative RNA helicase, putative.	0.956
A0A251SR88	Y14	A0A251SR88	A0A251TEK4	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	Putative RNA-binding (RRM/RBD/RNP motifs) family protein.	0.900
A0A251T6T9	A0A251SCZ3	A0A251T6T9	A0A251SCZ3	Putative myb domain, plant, Homeodomain-like protein.	Uncharacterized protein.	0.834
A0A251T6T9	A0A251SR88	A0A251T6T9	A0A251SR88	Putative myb domain, plant, Homeodomain-like protein.	Putative RNA-binding motif protein 8, Nucleotide-binding alpha-beta plait domain protein.	0.834
A0A251T6T9	A0A251TV12	A0A251T6T9	A0A251TV12	Putative myb domain, plant, Homeodomain-like protein.	Putative regulator of nonsense-mediated decay, UPF3.	0.831
A0A251T6T9	A0A251V5Q0	A0A251T6T9	A0A251V5Q0	Putative myb domain, plant, Homeodomain-like protein.	Putative regulator of nonsense-mediated decay, UPF3.	0.831