A0A251VI36 protein (Helianthus annuus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A251VI36

Putative elongation factor 4. (95 aa)

Predicted Functional Partners:

A0A251V790

0.981

A0A251TS84

0.972

A0A251VPM3

0.971

A0A251UJC4

0.967

A0A251SKC6

0.955

A0A251TNY2

0.954

A0A251SBZ4

0.942

A0A251UHM5

0.935

A0A251S2J9

0.930

A0A251UZX8

0.924

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251S2J9	A0A251SKC6	Putative ribosomal protein L37ae, Zinc-binding ribosomal protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.998
A0A251S2J9	A0A251UHM5	Putative ribosomal protein L37ae, Zinc-binding ribosomal protein.	Putative ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
A0A251S2J9	A0A251UZX8	Putative ribosomal protein L37ae, Zinc-binding ribosomal protein.	Putative sequence-specific DNA binding transcription factor.	0.997
A0A251S2J9	A0A251V790	Putative ribosomal protein L37ae, Zinc-binding ribosomal protein.	Putative ribosomal protein L2.	0.999
A0A251S2J9	A0A251VI36	Putative ribosomal protein L37ae, Zinc-binding ribosomal protein.	Putative elongation factor 4.	0.930
A0A251S2J9	A0A251VPM3	Putative ribosomal protein L37ae, Zinc-binding ribosomal protein.	Putative ribosomal protein L18/L5.	0.999
A0A251SBZ4	A0A251SKC6	Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.993
A0A251SBZ4	A0A251TS84	Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein.	Putative translation elongation factor EF1B/ribosomal protein S6 family protein.	0.999
A0A251SBZ4	A0A251UJC4	Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.995
A0A251SBZ4	A0A251V790	Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein.	Putative ribosomal protein L2.	0.894
A0A251SBZ4	A0A251VI36	Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein.	Putative elongation factor 4.	0.942
A0A251SBZ4	A0A251VPM3	Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein.	Putative ribosomal protein L18/L5.	0.980
A0A251SKC6	A0A251S2J9	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Putative ribosomal protein L37ae, Zinc-binding ribosomal protein.	0.998
A0A251SKC6	A0A251SBZ4	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein.	0.993
A0A251SKC6	A0A251TS84	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Putative translation elongation factor EF1B/ribosomal protein S6 family protein.	0.993
A0A251SKC6	A0A251UHM5	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Putative ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
A0A251SKC6	A0A251UJC4	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.993
A0A251SKC6	A0A251UZX8	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Putative sequence-specific DNA binding transcription factor.	0.959
A0A251SKC6	A0A251V790	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Putative ribosomal protein L2.	0.999
A0A251SKC6	A0A251VI36	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	Putative elongation factor 4.	0.955