STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103708396Rhomboid-like protein 19. (320 aa)    
Predicted Functional Partners:
LOC103704275
Uncharacterized protein LOC103704275.
   
 
  0.527
LOC103715287
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 
  0.527
LOC103699104
Bet1-like SNARE 1-1 isoform X1.
   
 
  0.463
LOC103705471
Bet1-like SNARE 1-1.
   
 
  0.463
LOC103715460
Bet1-like SNARE 1-1.
   
 
  0.463
LOC103720598
Rhomboid-like protein 15.
   
  
 0.418
LOC103702736
RHOMBOID-like protein.
      
 0.416
LOC103712529
RHOMBOID-like protein 10, chloroplastic isoform X1.
      
 0.416
LOC103719550
Transmembrane protein 208 homolog.
      
 0.412
LOC113463167
Uncharacterized protein LOC113463167.
      
 0.412
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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