STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103710162Protein RNA-directed DNA methylation 3. (2039 aa)    
Predicted Functional Partners:
LOC103711254
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.942
LOC103723766
DNA-directed RNA polymerase II subunit 4 isoform X1.
    
 0.935
LOC103712849
DNA-directed RNA polymerases I and III subunit rpac1.
    
 0.934
LOC103699115
DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
 0.923
LOC103706776
DNA-directed RNA polymerases II, IV and V subunit 11.
    
 0.913
LOC103716802
DNA-directed RNA polymerases IV and V subunit 4 isoform X1.
    
 0.901
LOC103706290
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
   
 0.862
LOC103713979
FACT complex subunit SPT16-like.
   
 0.849
LOC103717831
FACT complex subunit SPT16-like.
   
 0.849
LOC103716854
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.840
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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