STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103716563High mobility group B protein 7-like. (193 aa)    
Predicted Functional Partners:
LOC103722428
Actin-related protein 4; Belongs to the actin family.
   
 0.729
LOC103716019
General transcription and DNA repair factor IIH subunit TFB4 isoform X1.
    
 0.689
LOC103699115
DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.683
LOC103697837
Actin-related protein 9-like.
    
 0.676
LOC103710401
Actin-related protein 9.
    
 0.676
LOC103702188
INO80 complex subunit C.
    
 0.660
LOC103702683
DNA-directed RNA polymerase I subunit rpa49.
    
 0.630
LOC103718149
LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPD.
    
 0.613
LOC103698213
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.600
LOC103697264
Actin-related protein 5-like isoform X1; Belongs to the actin family.
    
 0.593
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.