STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103720942Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (365 aa)    
Predicted Functional Partners:
LOC103711789
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
 
 0.846
LOC103712982
60S ribosomal protein L23A-like; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.829
LOC103717303
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.829
LOC103723931
60S ribosomal protein L23A-like; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.829
LOC103712997
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 0.827
LOC103701866
60S ribosomal protein L26-1-like.
  
   0.823
LOC103713997
60S ribosomal protein L26-2-like.
  
   0.823
LOC103696701
50S ribosomal protein L24, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
  
   0.823
LOC103704554
G-box-binding factor 1-like isoform X1.
  
 
 0.810
LOC103708588
60S ribosomal protein L5-like.
  
 
 0.810
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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