STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10370519115-cis-phytoene desaturase, chloroplastic/chromoplastic. (544 aa)    
Predicted Functional Partners:
LOC103722002
15-cis-zeta-carotene isomerase, chloroplastic.
  
  
 0.990
LOC103719284
Phytoene synthase 2, chloroplastic-like isoform X1.
  
 
 0.976
LOC103723585
Phytoene synthase 2, chloroplastic-like.
  
 
 0.976
LOC103723760
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
 
0.951
LOC103707328
Prolycopene isomerase 1, chloroplastic isoform X1.
  
  
 0.906
LOC103710719
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
   
 
 0.703
LOC103721734
Violaxanthin de-epoxidase, chloroplastic; Belongs to the calycin superfamily. Lipocalin family.
   
  
 0.681
LOC103701064
High mobility group B protein 9.
    
  0.664
LOC103708729
High mobility group B protein 9-like.
    
  0.664
LOC103710645
High mobility group B protein 15-like.
    
  0.664
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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