STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103706488LOW QUALITY PROTEIN: formamidopyrimidine-DNA glycosylase. (387 aa)    
Predicted Functional Partners:
LOC103715106
dephospho-CoA kinase-like isoform X1.
  
  
 0.892
LOC103718622
dephospho-CoA kinase isoform X1.
  
  
 0.892
LOC103710135
LOW QUALITY PROTEIN: uncharacterized protein LOC103710135.
   
  
 0.842
LOC103714486
Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.
   
  
 0.842
LOC103707593
Uncharacterized protein LOC103707593.
  
  
 0.774
LOC103721207
LOW QUALITY PROTEIN: DNA polymerase I A, chloroplastic-like.
  
  
 0.774
LOC103710891
Helicase and polymerase-containing protein TEBICHI.
  
  
 0.774
LOC103715265
DNA polymerase I A, chloroplastic-like.
  
  
 0.774
LOC103712928
Helicase and polymerase-containing protein TEBICHI-like.
  
  
 0.774
LOC103695782
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
  
 0.731
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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