STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP08793.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (264 aa)    
Predicted Functional Partners:
SEP02510.1
PAS domain S-box-containing protein.
   
 0.997
SEO74734.1
PAS domain S-box-containing protein.
   
 0.991
SEP01358.1
PAS domain S-box-containing protein.
   
 0.977
SEN80903.1
Hpt domain-containing protein.
   
 0.967
SEO68156.1
Signal transduction histidine kinase.
   
 0.956
SEO16802.1
Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX/two-component system, NarL family, sensor histidine kinase UhpB.
 
 0.914
SEO40928.1
PAS domain S-box-containing protein.
 
 0.913
SEO95089.1
Two-component system, NarL family, sensor histidine kinase UhpB.
 
 0.910
SEP08848.1
Two-component system, NarL family, sensor kinase.
 
  
  0.892
SEO64994.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
 0.891
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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