STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1606KEGG: ppr:PBPRB0221 putative adh_zinc, zinc-binding dehydrogenases. (325 aa)    
Predicted Functional Partners:
Ssed_1607
KEGG: nha:Nham_2100 short-chain dehydrogenase/reductase SDR.
 
 
 0.749
Ssed_3202
KEGG: slo:Shew_2665 beta-ketoacyl synthase.
  
 
 0.561
Ssed_3204
KEGG: ppr:PBPRA1458 omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.544
Ssed_1605
KEGG: cps:CPS_1457 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.527
Ssed_1596
KEGG: slo:Shew_2563 alcohol dehydrogenase, zinc-binding domain protein.
 
  
 0.495
Ssed_3967
KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding.
     
 0.420
Ssed_3203
KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB.
  
 
 0.408
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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