STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_2225KEGG: sfr:Sfri_2024 aspartate transaminase. (398 aa)    
Predicted Functional Partners:
Ssed_2930
KEGG: slo:Shew_1435 phenylalanine-4-hydroxylase.
  
 
 0.970
Ssed_2687
KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.967
Ssed_1168
KEGG: slo:Shew_1072 chorismate mutase.
    
 0.943
Ssed_1164
KEGG: shm:Shewmr7_2915 chorismate mutase.
    
 0.942
hisC
KEGG: slo:Shew_2199 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.931
Ssed_3739
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.919
Ssed_1559
KEGG: she:Shewmr4_2477 methionine gamma-lyase.
   
 
 0.910
Ssed_2485
KEGG: sfr:Sfri_2230 putative GAF sensor protein.
    
  0.910
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.907
Ssed_2301
KEGG: slo:Shew_1951 aspartate transaminase.
  
  
 
0.905
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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