STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (637 aa)    
Predicted Functional Partners:
Ssed_2607
KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family.
 
 
 0.975
aguA
Agmatine deiminase; KEGG: csa:Csal_1189 porphyromonas-type peptidyl-arginine deiminase.
 
  
 0.957
Ssed_0810
KEGG: slo:Shew_0579 arginine N-succinyltransferase.
  
  
  0.912
Ssed_2608
KEGG: saz:Sama_1962 adenosylmethionine decarboxylase.
     
 0.700
Ssed_2625
KEGG: she:Shewmr4_2397 malonyl CoA-acyl carrier protein transacylase.
   
    0.621
Ssed_2407
KEGG: vpa:VP1774 putative carbon-nitrogen hydrolase.
 
   
 0.513
Ssed_3310
KEGG: slo:Shew_2755 conserved hypothetical protein 730.
  
   
 0.500
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.499
pdxH
Pyridoxal 5'-phosphate synthase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
 
     0.495
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
0.485
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.