STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3325KEGG: slo:Shew_2767 OmpA/MotB domain protein. (325 aa)    
Predicted Functional Partners:
Ssed_3326
KEGG: slo:Shew_2768 MotA/TolQ/ExbB proton channel.
 
 0.999
Ssed_0050
KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel.
  
 0.991
Ssed_0049
OmpA/MotB; KEGG: sdn:Sden_3631 OmpA/MotB.
     
0.916
Ssed_3089
KEGG: slo:Shew_1343 response regulator receiver modulated CheW protein.
 
  
 0.910
Ssed_2899
KEGG: slo:Shew_1457 response regulator receiver modulated CheW protein.
 
  
 0.909
Ssed_3047
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
  
 0.903
Ssed_2678
KEGG: slo:Shew_2144 response regulator receiver modulated CheW protein.
  
  
 0.896
Ssed_3046
KEGG: slo:Shew_1386 CheA signal transduction histidine kinase.
 
  
 0.881
Ssed_4430
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
 
 0.878
Ssed_3071
KEGG: slo:Shew_1361 flagellar protein FliS.
 
  
 0.874
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.