STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_3552KEGG: slo:Shew_2984 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. (516 aa)    
Predicted Functional Partners:
Ssed_1125
KEGG: spc:Sputcn32_1135 glutamate synthase, small subunit.
 
 0.996
Ssed_1126
KEGG: slo:Shew_1032 glutamate synthase (ferredoxin).
 
 
0.948
Ssed_1067
KEGG: bra:BRADO5800 putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP oxidoreductase, gamma subunit (KorC-like).
 
 
 0.922
Ssed_1932
KEGG: cbo:CBO0432 pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.901
Ssed_2274
KEGG: mca:MCA0770 pyridine nucleotide-disulphide oxidoreductase family protein.
 
 0.899
Ssed_0838
KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.873
Ssed_1665
KEGG: pmy:Pmen_2951 NADH:flavin oxidoreductase/NADH oxidase.
  
 
 0.862
Ssed_2310
KEGG: she:Shewmr4_1910 NADH:flavin oxidoreductase/NADH oxidase.
  
 
 0.862
Ssed_1877
KEGG: slo:Shew_1555 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.828
gcvP
2-alkenal reductase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.610
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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