STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_4349General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (158 aa)    
Predicted Functional Partners:
Ssed_4350
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.994
Ssed_4352
KEGG: slo:Shew_3613 general secretion pathway protein J.
 
  
 0.934
Ssed_4351
KEGG: slo:Shew_3612 general secretion pathway protein K.
 
  
 0.928
Ssed_4353
KEGG: sbl:Sbal_4201 general secretion pathway protein I.
 
   
 0.928
Ssed_4348
KEGG: slo:Shew_3609 type II secretion system protein N.
 
   
 0.922
Ssed_4354
KEGG: slo:Shew_3615 general secretion pathway protein H.
 
   
 0.918
Ssed_4359
KEGG: slo:Shew_3620 general secretion pathway protein C.
 
   
 0.916
Ssed_4358
KEGG: slo:Shew_3619 general secretion pathway protein D.
 
  
 0.876
Ssed_4355
KEGG: slo:Shew_3616 general secretion pathway protein G.
 
  
 0.776
Ssed_2047
KEGG: shw:Sputw3181_2156 rhomboid family protein.
 
     0.735
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.