STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB20683.1Integral membrane protein, YkoY family. (263 aa)    
Predicted Functional Partners:
SEB20679.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; Belongs to the FtsK/SpoIIIE/SftA family.
       0.758
SEB20699.1
Tellurium resistance protein TerD.
  
    0.647
SEB20704.1
Tellurium resistance protein TerD.
  
    0.646
SEB20674.1
Voltage-gated potassium channel.
       0.638
SEB20688.1
Hypothetical protein.
       0.631
SEB20694.1
OmpA family protein.
       0.631
SEB20720.1
Hypothetical protein.
 
     0.590
SEB20709.1
Hypothetical protein.
       0.530
SEB20714.1
Hypothetical protein.
       0.530
SEB20724.1
Hypothetical protein.
       0.502
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.