STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M446_5548Conserved hypothetical protein; KEGG: ana:alr7249 unknown protein. (490 aa)    
Predicted Functional Partners:
M446_2511
Hypothetical protein; KEGG: amr:AM1_E0006 transposase, IS4 family, putative.
 
     0.790
M446_4015
Hypothetical protein; KEGG: amr:AM1_E0006 transposase, IS4 family, putative.
  
     0.774
M446_5546
Hypothetical protein; KEGG: amr:AM1_E0006 transposase, IS4 family, putative.
  
     0.774
M446_5547
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rpa:RPA3475 putative transposase.
       0.540
M446_6090
KEGG: bra:BRADO7075 hypothetical protein.
  
     0.479
M446_3909
PFAM: monooxygenase FAD-binding; KEGG: bvi:Bcep1808_6380 hypothetical protein.
  
     0.475
M446_2960
PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: gvi:gll3552 hypothetical protein.
  
     0.441
M446_6909
PFAM: transposase IS4 family protein; KEGG: ret:RHE_PA00092 probable insertion sequence transposase protein, IS4 family.
 
     0.410
Your Current Organism:
Methylobacterium sp. 446
NCBI taxonomy Id: 426117
Other names: M. sp. 4-46, Methylobacterium sp. 4-46
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