STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eKEGG: mmp:MMP0151 LSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (47 aa)    
Predicted Functional Partners:
rps6e
PFAM: Ribosomal protein S6e; KEGG: mmp:MMP1207 ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.999
rps13
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
  
 0.999
rpl18e
PFAM: ribosomal protein L15; KEGG: mmp:MMP1323 LSU ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family.
 
 0.999
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 0.999
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.999
rps4e
PFAM: RNA-binding S4 domain protein; Ribosomal protein S4E-like; Ribosomal protein S4E, central; KEGG: mmp:MMP1411 SSU ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.999
rpl32e
PFAM: Ribosomal protein L32e; KEGG: mmq:MmarC5_0162 ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 0.999
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
rps19
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.999
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: mmp:MMP1579 probable SSU ribosomal protein S15P/S13E.
   
 0.999
Your Current Organism:
Methanococcus maripaludis C7
NCBI taxonomy Id: 426368
Other names: M. maripaludis C7, Methanococcus maripaludis str. C7, Methanococcus maripaludis strain C7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.