STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75841.1Putative sporulation protein YunB; COG: NOG11559 non supervised orthologous group. (217 aa)    
Predicted Functional Partners:
EDS75842.1
Hypothetical protein.
       0.773
EDS75779.1
COG: COG2834 Outer membrane lipoprotein-sorting protein.
  
   
 0.771
EDS74606.1
Putative spore coat protein GerQ; COG: NOG14257 non supervised orthologous group.
  
     0.757
EDS75152.1
Polysaccharide biosynthesis protein; KEGG: cac:CAC3205 0.0061 spoIIE; stage II sporulation protein E, serine phosphatase family K06382; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.742
cwlJ
KEGG: bcz:BCZK2341 4.5e-26 cwlJ; cell wall hydrolase K01449; COG: COG3773 Cell wall hydrolyses involved in spore germination; Psort location: Cytoplasmic, score: 8.87.
  
    0.741
cotE
Spore coat protein E; COG: NOG09743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.740
EDS75082.1
COG: COG5401 Spore germination protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.731
spoIIP
Stage II sporulation protein P; COG: NOG06343 non supervised orthologous group.
  
     0.720
EDS75843.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.701
EDS76100.1
dUTP diphosphatase; COG: COG4508 Uncharacterized protein conserved in bacteria.
  
     0.677
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.