STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75868.1KEGG: reh:H16_A1397 4.0e-57 ABC-type transporter, ATPase component; COG: COG1101 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (261 aa)    
Predicted Functional Partners:
EDS75867.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: eco:b4460 7.6e-10 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K02057; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
    0.986
EDS75866.1
ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
    0.961
EDS75357.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 8.6e-11 ribose transport system permease protein RbsC; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
    0.922
EDS75356.1
ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
    0.824
EDS75550.1
KEGG: reh:H16_B0716 3.9e-98 dppF3; ABC-type transporter, ATPase component: PepT family; COG: COG4608 ABC-type oligopeptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     
0.603
EDS75549.1
KEGG: rru:Rru_A0589 5.6e-83 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     
0.419
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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