STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP12085.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
pyrR
Phosphoribosyl transferase domain protein; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.
       0.773
EDP12082.1
M42 glutamyl aminopeptidase; KEGG: btl:BALH_0809 1.8e-84 yhfE; deblocking aminopeptidase, M42 family K01269; COG: COG1363 Cellulase M and related proteins; Psort location: Cytoplasmic, score:8.87.
       0.762
EDP12084.1
Low molecular weight phosphotyrosine protein phosphatase; KEGG: ljo:LJ1013 1.7e-35 protein-tyrosine phosphatase K01104; COG: COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.572
EDP12081.1
Oligoendopeptidase, pepF/M3 family; KEGG: tte:TTE2488 2.9e-134 oligoendopeptidase F; COG: COG1164 Oligoendopeptidase F; Psort location: Cytoplasmic, score:9.98.
       0.522
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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