STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_0113PFAM: nucleoside recognition domain protein; KEGG: smd:Smed_2587 nucleoside recognition domain-containing protein. (369 aa)    
Predicted Functional Partners:
Adeg_0133
TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD.
 
   
 0.857
Adeg_0130
TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429.
 
   
 0.830
Adeg_1551
TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R.
  
   
 0.793
Adeg_0086
TIGRFAM: sporulation transcriptional regulator SpoIIID.
  
  
 0.792
Adeg_1554
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.791
Adeg_1401
TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A.
  
   
 0.780
Adeg_1682
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: dma:DMR_27920 putative drug resistance transporter.
  
    0.776
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.772
Adeg_1683
TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD.
  
     0.772
Adeg_1680
Hypothetical protein.
  
   
 0.769
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.