STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLM9_340CobW GTPase involved in cobalt insertion for B12 biosynthesis. (368 aa)    
Predicted Functional Partners:
FLM9_339
HupE-UreJ family cobalt transporter.
     
 0.706
FLM9_341
Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3).
       0.678
FLM9_577
CobN component of cobalt chelatase involved in B12 biosynthesis.
 
  
 0.620
FLM9_338
Putative lumenal protein, contains 8 pentapeptide repeats, sll0577 homolog.
       0.583
FLM9_1379
Cobalt-precorrin-7 (C5)-methyltransferase (EC 2.1.1.289) / Cobalt-precorrin-6B C15-methyltransferase [decarboxylating] (EC 2.1.1.196).
 
   
 0.574
rpsN
SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.550
map
Methionine aminopeptidase (EC 3.4.11.18); Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.508
FLM9_337
Uracil phosphoribosyltransferase (EC 2.4.2.9).
       0.460
rpmB
LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.432
FLM9_336
Hypothetical protein.
       0.404
Your Current Organism:
Synechococcus spongiarum
NCBI taxonomy Id: 431041
Other names: C. Synechococcus spongiarum, Candidatus Synechococcus spongiarum
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