STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTCD2Pentatricopeptide repeat domain 2. (383 aa)    
Predicted Functional Partners:
MRPL58
Mitochondrial ribosomal protein L58.
    
 
 0.781
MRPL16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
   0.756
MRPL11
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.752
MRPL33
Mitochondrial ribosomal protein L33.
   
   0.751
MRPL40
Mitochondrial ribosomal protein L40.
   
   0.737
I3MV02_ICTTR
RIBOSOMAL_L9 domain-containing protein.
   
   0.731
MRPL13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
   0.722
MRPL22
Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
    
   0.712
MRPL46
Mitochondrial ribosomal protein L46.
   
   0.689
MRPL32
Mitochondrial ribosomal protein L32.
   
   0.684
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.