STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKHD1L1PKHD1 like 1. (4254 aa)    
Predicted Functional Partners:
CDCP2
CUB domain containing protein 2.
    
 0.686
CBL
Cbl proto-oncogene.
    
 0.672
CBLB
Cbl proto-oncogene B.
    
 0.672
GAB1
GRB2 associated binding protein 1.
    
 0.599
HABP2
Hyaluronan binding protein 2.
    
 0.598
CUBN
Cubilin.
    
 0.583
I3MBK1_ICTTR
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
  0.581
HGFAC
HGF activator.
    
  0.581
MFRP
Membrane frizzled-related protein.
    
 0.541
TNS3
Tensin 3.
   
 
  0.540
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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