STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX29Sorting nexin 29. (812 aa)    
Predicted Functional Partners:
WDFY4
WDFY family member 4.
   
 
  0.843
UVRAG
UV radiation resistance associated.
    
 0.772
SNX21
Sorting nexin family member 21.
    
 0.553
SNX15
Sorting nexin 15.
    
 0.549
SNX19
Sorting nexin 19.
    
 0.545
PLEKHF2
Pleckstrin homology and FYVE domain containing 2.
    
 
 0.530
VPS45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.527
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.456
TXNDC11
Thioredoxin domain containing 11.
      
 0.456
COG5
Component of oligomeric golgi complex 5.
      
 0.450
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.