Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKL_0432 | CKL_0632 | CKL_0432 | CKL_0632 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | NifU-like protein. | 0.619 |
CKL_0432 | CKL_1317 | CKL_0432 | CKL_1317 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | Transcriptional regulator. | 0.759 |
CKL_0432 | CKL_1805 | CKL_0432 | CKL_1805 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | Hypothetical protein. | 0.725 |
CKL_0432 | CKL_3643 | CKL_0432 | CKL_3643 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | NifU-like protein. | 0.619 |
CKL_0432 | iscS | CKL_0432 | CKL_0816 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | IscS; Cysteine desulfurase. | 0.908 |
CKL_0432 | nifS1 | CKL_0432 | CKL_1087 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | NifS1; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.908 |
CKL_0432 | nifS2 | CKL_0432 | CKL_1318 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | NifS2; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.908 |
CKL_0432 | nifU1 | CKL_0432 | CKL_0832 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | NifU1; NifU-like protein. | 0.619 |
CKL_0432 | nifU2 | CKL_0432 | CKL_1319 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | NifU2; NifU-like protein. | 0.619 |
CKL_0432 | thiI | CKL_0432 | CKL_0817 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.637 |
CKL_0632 | CKL_0432 | CKL_0632 | CKL_0432 | NifU-like protein. | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 0.619 |
CKL_0632 | CKL_1317 | CKL_0632 | CKL_1317 | NifU-like protein. | Transcriptional regulator. | 0.479 |
CKL_0632 | iscS | CKL_0632 | CKL_0816 | NifU-like protein. | IscS; Cysteine desulfurase. | 0.907 |
CKL_0632 | nifS1 | CKL_0632 | CKL_1087 | NifU-like protein. | NifS1; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.920 |
CKL_0632 | nifS2 | CKL_0632 | CKL_1318 | NifU-like protein. | NifS2; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.931 |
CKL_1317 | CKL_0432 | CKL_1317 | CKL_0432 | Transcriptional regulator. | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 0.759 |
CKL_1317 | CKL_0632 | CKL_1317 | CKL_0632 | Transcriptional regulator. | NifU-like protein. | 0.479 |
CKL_1317 | CKL_3643 | CKL_1317 | CKL_3643 | Transcriptional regulator. | NifU-like protein. | 0.479 |
CKL_1317 | iscS | CKL_1317 | CKL_0816 | Transcriptional regulator. | IscS; Cysteine desulfurase. | 0.680 |
CKL_1317 | nifS1 | CKL_1317 | CKL_1087 | Transcriptional regulator. | NifS1; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.738 |
page 1 of 4