STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKL_2257Predicted Fe-only hydrogenase 1. (580 aa)    
Predicted Functional Partners:
CKL_0838
NADH dehydrogenase-related protein.
 
 
 0.986
hydE
HydE; Hydrogenase maturation protein HydE.
 
  
 0.839
hydF
HydF; Hydrogenase maturation protein HydF.
 
   
 0.779
hydG
HydG; Hydrogenase maturation protein HydG.
 
   
 0.752
CKL_2138
Pyruvate-flavodoxin oxidoreductase.
     
 0.726
CKL_0428
2Fe-2S ferredoxin.
 
 
 
 0.689
CKL_0117
Conserved hypothetical protein.
 
     0.621
CKL_3023
Conserved hypothetical protein.
  
 
 0.568
CKL_3337
Automatic annotation.
     
 0.522
CKL_0320
Conserved hypothetical protein containing a ferredoxin domain.
   
 
 0.491
Your Current Organism:
Clostridium kluyveri
NCBI taxonomy Id: 431943
Other names: C. kluyveri DSM 555, Clostridium kluyveri DSM 555, Clostridium kluyveri str. DSM 555, Clostridium kluyveri strain DSM 555
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