STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0121Glycoside hydrolase family 28; Distantly related to polygalacturonases; Belongs to the glycosyl hydrolase 28 family. (461 aa)    
Predicted Functional Partners:
BVU_0119
Putative beta-lactamase class C; Similar to other penicillin binding proteins.
 
     0.818
BVU_2833
Conserved hypothetical protein.
 
 
 0.771
BVU_0122
Conserved hypothetical protein.
 
    0.747
BVU_0890
Conserved hypothetical protein, putative glycosyltransferase.
  
     0.734
BVU_2827
Conserved hypothetical protein.
 
    0.672
BVU_0129
Conserved hypothetical protein.
 
    0.654
BVU_2161
Putative glycoside hydrolase; Related to beta-glycosidases.
  
     0.653
BVU_0120
Conserved hypothetical protein.
 
     0.640
BVU_2836
Putative terminase.
 
    0.624
BVU_0160
Carbohydrate esterase family 12 protein; Tandem repeat of two modules related to pectin acetylesterases.
 
   0.613
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.