Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVU_1170 | BVU_1174 | BVU_1170 | BVU_1174 | Putative membrane protein. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine. | 0.754 |
BVU_1170 | queA-2 | BVU_1170 | BVU_1173 | Putative membrane protein. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.777 |
BVU_1170 | truB | BVU_1170 | BVU_1172 | Putative membrane protein. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.787 |
BVU_1170 | uppP | BVU_1170 | BVU_1171 | Putative membrane protein. | Putative undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.787 |
BVU_1174 | BVU_1170 | BVU_1174 | BVU_1170 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine. | Putative membrane protein. | 0.754 |
BVU_1174 | queA-2 | BVU_1174 | BVU_1173 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.830 |
BVU_1174 | truB | BVU_1174 | BVU_1172 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.820 |
BVU_1174 | uppP | BVU_1174 | BVU_1171 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine. | Putative undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.814 |
BVU_1300 | BVU_3588 | BVU_1300 | BVU_3588 | Putative riboflavin kinase; Belongs to the ribF family. | Putative GMP synthase. | 0.487 |
BVU_1300 | guaA | BVU_1300 | BVU_3587 | Putative riboflavin kinase; Belongs to the ribF family. | Glutaminne-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.460 |
BVU_1300 | truB | BVU_1300 | BVU_1172 | Putative riboflavin kinase; Belongs to the ribF family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.791 |
BVU_3588 | BVU_1300 | BVU_3588 | BVU_1300 | Putative GMP synthase. | Putative riboflavin kinase; Belongs to the ribF family. | 0.487 |
BVU_3588 | guaA | BVU_3588 | BVU_3587 | Putative GMP synthase. | Glutaminne-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.983 |
BVU_3588 | infB | BVU_3588 | BVU_1355 | Putative GMP synthase. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.578 |
BVU_3588 | truB | BVU_3588 | BVU_1172 | Putative GMP synthase. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.875 |
guaA | BVU_1300 | BVU_3587 | BVU_1300 | Glutaminne-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | Putative riboflavin kinase; Belongs to the ribF family. | 0.460 |
guaA | BVU_3588 | BVU_3587 | BVU_3588 | Glutaminne-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | Putative GMP synthase. | 0.983 |
guaA | infB | BVU_3587 | BVU_1355 | Glutaminne-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.578 |
guaA | truB | BVU_3587 | BVU_1172 | Glutaminne-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.875 |
infB | BVU_3588 | BVU_1355 | BVU_3588 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Putative GMP synthase. | 0.578 |
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