STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_3384Conserved hypothetical protein. (231 aa)    
Predicted Functional Partners:
BVU_3383
Putative mobilization protein.
 
     0.884
BVU_3381
Conserved hypothetical protein found in conjugate transposon TraN.
 
     0.864
BVU_3380
Conserved protein found in conjugate transposon TraM.
 
     0.831
BVU_3377
Conserved hypothetical protein.
 
     0.821
BVU_3359
Transposase.
  
   
 0.765
BVU_3393
Putative DNA topoisomerase I.
 
     0.762
BVU_3365
Putative mobilization protein.
 
     0.752
BVU_3382
Putative exported protein.
       0.712
BVU_3389
Putative DNA mismatch repair protein mutS.
  
     0.700
BVU_3430
DNA primase.
  
     0.675
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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