STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapLAspartate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. (409 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 0.990
BVU_1257
Dihydrodipicolinate reductase; Belongs to the DapB family.
    
 0.912
BVU_2062
Putative aminotransferase.
     
 
0.900
BVU_4003
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
     
 0.637
BVU_4002
Ammonium transporter.
     
 0.615
BVU_4004
Conserved hypothetical protein.
  
    0.572
BVU_2050
Putative aspartokinase I-homoserine dehydrogenase.
  
 
 0.510
BVU_3604
Putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.452
BVU_0245
NADP-dependent malate dehydrogenase.
  
 
 0.426
BVU_0574
Acetyl-coenzyme A synthetase.
 
 
 0.426
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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