OSTLU_17346 protein (Ostreococcus lucimarinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OSTLU_17346

Uncharacterized protein; Belongs to the RecA family. (358 aa)

Predicted Functional Partners:

OSTLU_86836

0.943

OSTLU_35638

0.880

OSTLU_26389

0.857

OSTLU_93957

0.827

OSTLU_26240

0.815

OSTLU_43144

0.757

OSTLU_50387

0.749

OSTLU_33041

0.734

OSTLU_28736

0.730

OSTLU_17589

0.706

Your Current Organism:

Ostreococcus lucimarinus

NCBI taxonomy Id: 436017
Other names: O. lucimarinus CCE9901, Ostreococcus lucimarinus CCE9901

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSTLU_17346	OSTLU_17589	A4S4R7	A4S5M9	Uncharacterized protein; Belongs to the RecA family.	RECA_2 domain-containing protein.	0.706
OSTLU_17346	OSTLU_26240	A4S4R7	A4S409	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein; Belongs to the RecA family.	0.815
OSTLU_17346	OSTLU_26389	A4S4R7	A4S4F0	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.857
OSTLU_17346	OSTLU_28736	A4S4R7	A4RQP6	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.730
OSTLU_17346	OSTLU_33041	A4S4R7	A4S1B6	Uncharacterized protein; Belongs to the RecA family.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily.	0.734
OSTLU_17346	OSTLU_35638	A4S4R7	A4S0F9	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.880
OSTLU_17346	OSTLU_43144	A4S4R7	A4S7V9	Uncharacterized protein; Belongs to the RecA family.	Mre11_DNA_bind domain-containing protein.	0.757
OSTLU_17346	OSTLU_50387	A4S4R7	A4S2Y8	Uncharacterized protein; Belongs to the RecA family.	RECA_2 domain-containing protein.	0.749
OSTLU_17346	OSTLU_86836	A4S4R7	A4RV28	Uncharacterized protein; Belongs to the RecA family.	RECA_2 domain-containing protein.	0.943
OSTLU_17346	OSTLU_93957	A4S4R7	A4S9Z2	Uncharacterized protein; Belongs to the RecA family.	AAA domain-containing protein.	0.827
OSTLU_17589	OSTLU_17346	A4S5M9	A4S4R7	RECA_2 domain-containing protein.	Uncharacterized protein; Belongs to the RecA family.	0.706
OSTLU_17589	OSTLU_26389	A4S5M9	A4S4F0	RECA_2 domain-containing protein.	Uncharacterized protein.	0.870
OSTLU_17589	OSTLU_28736	A4S5M9	A4RQP6	RECA_2 domain-containing protein.	Uncharacterized protein.	0.615
OSTLU_17589	OSTLU_35638	A4S5M9	A4S0F9	RECA_2 domain-containing protein.	Uncharacterized protein.	0.965
OSTLU_17589	OSTLU_43144	A4S5M9	A4S7V9	RECA_2 domain-containing protein.	Mre11_DNA_bind domain-containing protein.	0.681
OSTLU_17589	OSTLU_86836	A4S5M9	A4RV28	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.820
OSTLU_17589	OSTLU_93957	A4S5M9	A4S9Z2	RECA_2 domain-containing protein.	AAA domain-containing protein.	0.854
OSTLU_26240	OSTLU_17346	A4S409	A4S4R7	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein; Belongs to the RecA family.	0.815
OSTLU_26240	OSTLU_26389	A4S409	A4S4F0	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.870
OSTLU_26240	OSTLU_28736	A4S409	A4RQP6	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.615