STRINGSTRING
Nmar_0026 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0026" - PFAM: short-chain dehydrogenase/reductase SDR in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0026PFAM- short-chain dehydrogenase/reductase SDR; KEGG- bam-Bamb_6220 short-chain dehydrogenase/reductase SDR (269 aa)    
Predicted Functional Partners:
Nmar_0024
PFAM- inositol monophosphatase; KEGG- mca-MCA2983 3’(2’),5’-bisphosphate nucleotidase (271 aa)
 
     
  0.765
Nmar_0025
annotation not available (68 aa)
              0.713
Nmar_0546
Aminotransferase; PFAM- Chorismate mutase; aminotransferase class I and II; KEGG- tpt-Tpet_1516 aminotransferase, class I and II (456 aa)
 
   
  0.516
Nmar_0299
PFAM- ribulose-phosphate 3-epimerase; Transketolase domain protein; KEGG- pth-PTH_2750 transketolase, N-terminal subunit (555 aa)
 
     
  0.484
Nmar_0027
annotation not available (142 aa)
              0.468
Nmar_1008
D-alanine--D-alanine ligase; PFAM- peptidase M20; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG- amt-Amet_3744 D-alanine--D-alanine ligase domain protein (743 aa)
 
 
  0.457
Nmar_0323
TIGRFAM- glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM- glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG- pab-PAB2201 glucosamine--fructose-6-phosphate aminotransferase (586 aa)
 
   
  0.412
Nmar_0028
annotation not available (183 aa)
              0.411
Nmar_0273
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM- ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG- msi-Msm_0765 pyruvate carboxylase (acetyl-CoA/biotin carboxylase), subunit A, PycA (495 aa)
 
 
  0.407
Nmar_0819
8-amino-7-oxononanoate synthase; PFAM- aminotransferase class I and II; KEGG- tac-Ta1189 8-amino-7-oxononanoate synthase (374 aa)
 
 
  0.404
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (13%) [HD]