STRINGSTRING
Nmar_0034 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0034" - KEGG: pfu:PF1029 hypothetical protein in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0034KEGG- pfu-PF1029 hypothetical protein (335 aa)    
Predicted Functional Partners:
Nmar_0033
annotation not available (86 aa)
              0.848
Nmar_0035
annotation not available (116 aa)
              0.845
Nmar_0036
annotation not available (64 aa)
              0.658
Nmar_1428
PFAM- THUMP domain protein; KEGG- tpe-Tpen_0214 THUMP domain protein (173 aa)
   
          0.591
queE
7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds (237 aa)
              0.554
pfdA
Prefoldin subunit alpha; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (145 aa)
   
          0.541
Nmar_0089
PFAM- nucleic acid binding OB-fold tRNA/helicase-type; KEGG- mmp-MMP1032 replication protein A (466 aa)
   
          0.521
Nmar_0107
PFAM- peptidase M50; SMART- PDZ/DHR/GLGF domain protein; KEGG- pfu-PF0167 metalloprotease (398 aa)
   
          0.504
Nmar_1513
PFAM- Protein of unknown function DUF54; KEGG- mja-MJ0213 hypothetical protein (141 aa)
   
          0.496
Nmar_1627
Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen (884 aa)
   
     
  0.478
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (10%) [HD]